PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g097350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 398aa MW: 46105.9 Da PI: 6.7946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g097350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.2e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ Csa09g097350.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 100 69**************************.99**********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++l+g++ktLvfykgrap+g+k+dW+mheyrle Csa09g097350.1 101 YI-RHSLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.882	7	156	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MNSFTQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN 60 EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLTGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GIPQEEGWVV CRVFKKKLAA TVRKMGDYNS SPSHWYDDRL 180 SFISSELDSS SPQQFIPNHH YNRHHHDHQQ TLPCGLNASS AYAFNNNPNL QCKQELELHY 240 NHMVQYQQQN HHLRESVFLQ LPQLESPNSN CSSLPYGSSN NNKNTRDIGN LQQSSNLSHE 300 QQLQQGNQSF SSLYYDQGVE QVTTDWRVLD KFVASQLSNE EAAAASSHQN DIKIDTRNTA 360 YDQVRENDSE RVVEMGEEYT NAHAASTSSS CQIDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MNSFTQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN  60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLTGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GIPQEEGWVV CRVFKKKLAA TVRKMGDYNS SPSHWYDDRL  180
SFISSELDSS SPQQFIPNHH YNRHHHDHQQ TLPCGLNASS AYAFNNNPNL QCKQELELHY  240
NHMVQYQQQN HHLRESVFLQ LPQLESPNSN CSSLPYGSSN NNKNTRDIGN LQQSSNLSHE  300
QQLQQGNQSF SSLYYDQGVE QVTTDWRVLD KFVASQLSNE EAAAASSHQN DIKIDTRNTA  360
YDQVRENDSE RVVEMGEEYT NAHAASTSSS CQIDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	7	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g097350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007190	1e-147	AC007190.4 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence.
GenBank	CP002684	1e-147	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430340.1	0.0	PREDICTED: NAC domain-containing protein 26-like
Swissprot	F4HYV5	0.0	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	R0GGE4	0.0	R0GGE4_9BRAS; Uncharacterized protein
STRING	XP_010430340.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	0.0	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]