PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g097750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 257aa    MW: 26678.7 Da    PI: 4.9333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g097750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1693141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Csa09g097750.1  93 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 141
                     69***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-1792151No hitNo description
PfamPF008476.9E-1092141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2693151IPR001471AP2/ERF domain
PROSITE profilePS5103220.3193149IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1893151IPR016177DNA-binding domain
SMARTSM003809.0E-2993155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MADPNNQITE PKAISQASSS SSVTILPVRT CGDSVSDSAT CENPCPLDSI TSAATSTTTT  60
VSFAAPSSTT SGHGINTLMS TDADISRRKK HPLYRGIRCR SGKWVSEIRE PKKTTRVWLG  120
TYPTPEMAAA AYDVAALALK GRDTVLNFPD SVGSYPIPLS SSAAHIRCAA AAAAAARGAG  180
TGAAAVKGGE KKEEEACDGA GSSNTQHFVD EEELLNMPGL LADMAKGMMV APPWMGSPPS  240
DDSPENSDGE SLWSYY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g097750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430381.10.0PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN91e-113ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLR0GG541e-129R0GG54_9BRAS; Uncharacterized protein
STRINGXP_010430381.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.14e-41ERF family protein