PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g097840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 640aa    MW: 71274.8 Da    PI: 6.8575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g097840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.55.3e-1312556361374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+   ea++s++ +++++++ar s+lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+Pi+kf 
  Csa09g097840.1 255 LVNLLTGSLEAIRSRNIAAINHFIARTSDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFI 349
                     5789999****************************99***********************************99********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rled+
  Csa09g097840.1 350 HFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDV 439
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd+++++l+++s  r+k
  Csa09g097840.1 440 RLWMLHVKEGESVAVNCVMQMHKTLYDGTGGAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLIRVK 532
                     *************************77666655..89********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee...........sgslvlgWkdr 365
                     +E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++ve +           sg ++l W+++
  Csa09g097840.1 533 IEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFNVERSdedgdggeggsSGGVTLRWSEQ 627
                     ************************************************************98566689999556678889899899999****** PP

            GRAS 366 pLvsvSaWr 374
                     pL+++SaW+
  Csa09g097840.1 628 PLYTISAWT 636
                     ********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.993229602IPR005202Transcription factor GRAS
PfamPF035141.8E-128255636IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFTR KETPSTRPLG  60
RSISLDNNNN NNTKPIERKT SGCSLKQNIK LPPLATTRGN GEGFSWNNDS NNNNNRGKKS  120
LKRLAEEEDE SCLSRAKRTK CENEGDGDDE GKVCFVPSEV ISQPLPNNHP NWVDSVITEL  180
AGIGDKDVES SRPAAVKEAS GSSTSASSES QSLSHRGGVP EPTNGSRNPY THSTEERTSG  240
NINNNRNDLQ RDFELVNLLT GSLEAIRSRN IAAINHFIAR TSDLASPRGR TPMTRLIAYY  300
IEALALRVAR MWPHIFHIAP PREFDRTVED ESGNALRFLN QVTPIPKFIH FTANEMLLRA  360
FEGKERVHII DFDIKQGLQW PSFFQSLASR TNPPHHVRIT GIGESKLELN ETGDRLHGFA  420
EAMNLQFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCVMQM HKTLYDGTGG AIRDFLGLIR  480
STNPIALVLA EQEAEHNSEQ LETRVCNSLK YYSAMFDAIH TNLATDSLIR VKIEEMLFGR  540
EIRNIVACEG SHRQERHVGF RHWRRMLEQL GFRSLGVSER EVLQSKMLLR MYGSGNEGFF  600
NVERSDEDGD GGEGGSSGGV TLRWSEQPLY TISAWTIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6226463628379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g097840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430392.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2H1ZEE00.0A0A2H1ZEE0_ARATH; GRAS family transcription factor
STRINGXP_010430391.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein