PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g099370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 849aa MW: 94266 Da PI: 6.7236

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g099370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.7e-29	561	611	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Csa09g099370.1 561 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 611 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	546	631	IPR003035	RWP-RK domain
Pfam	PF02042	8.1E-26	563	611	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-21	740	830	No hit	No description
SMART	SM00666	6.6E-22	748	830	IPR000270	PB1 domain
PROSITE profile	PS51745	19.007	748	830	IPR000270	PB1 domain
Pfam	PF00564	2.6E-17	749	829	IPR000270	PB1 domain
CDD	cd06407	1.76E-33	749	829	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.6E-26	749	830	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MELDDLDLSG SWPLDQIIFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG AGDLYVAPSR 60 FTVLAPPPPP PPPSSETDTT TKAIIIDNHH AAPSPYSGIM PSSENNNNNP DSYCAIKAKM 120 TQALRYFKES TGQQHLLAQV WAPVKNRGRY VLTTSGQPFV LAPNSNGLHQ YRMVSLTYMF 180 SLDGELDGDL GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR 240 QLCVGVVELI MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHETTQICNE GRQNALAEIL 300 EILTVVCETY KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV 360 DAHVWGFRDA CAEHHLQKGQ GVAGRAFLSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC 420 FAVCLKSTFT GDDEYVLEFF LPPAITDRRE QDFLLGSLFQ TMKQHYSSLK VVSETELCEN 480 EISLEVVEAS EDGMVYSKLE PIRIHHPAPI SKDYLELNAP EQKLSLNSDL MANGFERFQT 540 LEPLPEAKTV KKSERKRGKT EKTISIEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI 600 SRWPSRKINK VNRSLTRLKH VIDSVQGADG SLNLTSLSPR PWSHQISPTE NQPPKNFPPA 660 STSPPSYLQD VKIENRDAED SAGSSTSRAS CKVGVICETR FRLPTHNQET VRQTALDDSD 720 SSSKNIANFW THLSCQDTAS PTTLHNKLVS IKATYREDII RFKISPESVS IMGLKQQVAK 780 RLKLEMAAFE LKYLDDDSEW VSVSCDADLS ECLDTSAAKA NTLRLSVHDV TLNFGSSCES 840 SEENMMCL*

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MELDDLDLSG SWPLDQIIFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG AGDLYVAPSR  60
FTVLAPPPPP PPPSSETDTT TKAIIIDNHH AAPSPYSGIM PSSENNNNNP DSYCAIKAKM  120
TQALRYFKES TGQQHLLAQV WAPVKNRGRY VLTTSGQPFV LAPNSNGLHQ YRMVSLTYMF  180
SLDGELDGDL GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR  240
QLCVGVVELI MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHETTQICNE GRQNALAEIL  300
EILTVVCETY KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV  360
DAHVWGFRDA CAEHHLQKGQ GVAGRAFLSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC  420
FAVCLKSTFT GDDEYVLEFF LPPAITDRRE QDFLLGSLFQ TMKQHYSSLK VVSETELCEN  480
EISLEVVEAS EDGMVYSKLE PIRIHHPAPI SKDYLELNAP EQKLSLNSDL MANGFERFQT  540
LEPLPEAKTV KKSERKRGKT EKTISIEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI  600
SRWPSRKINK VNRSLTRLKH VIDSVQGADG SLNLTSLSPR PWSHQISPTE NQPPKNFPPA  660
STSPPSYLQD VKIENRDAED SAGSSTSRAS CKVGVICETR FRLPTHNQET VRQTALDDSD  720
SSSKNIANFW THLSCQDTAS PTTLHNKLVS IKATYREDII RFKISPESVS IMGLKQQVAK  780
RLKLEMAAFE LKYLDDDSEW VSVSCDADLS ECLDTSAAKA NTLRLSVHDV TLNFGSSCES  840
SEENMMCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g099370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430590.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	R0GCV5	0.0	R0GCV5_9BRAS; Uncharacterized protein
STRING	XP_010430590.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]