PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10383s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 88aa MW: 10348.8 Da PI: 9.1497

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10383s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	11	75	2	65
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkik 65 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k Csa10383s010.1 11 WREQEAFVLLEIWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSETQCRRMIDNLKRKYRKEK 75 ***********************************788899******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-18	10	81	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
GPSDGKVGYD WREQEAFVLL EIWGDRFLQL GRRSLRNEDW NEVAEKVSEE LRMEKSETQC 60 RRMIDNLKRK YRKEKIKVEK SGLGVFG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10383s010.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020746	2e-96	AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBank	AK220644	2e-96	AK220644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-59-N16.
GenBank	CP002686	2e-96	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488557.1	9e-53	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_010513519.1	1e-52	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	D7L537	3e-49	D7L537_ARALL; Uncharacterized protein
TrEMBL	R0HMM0	4e-49	R0HMM0_9BRAS; Uncharacterized protein
STRING	XP_010488557.1	3e-52	(Camelina sativa)
STRING	XP_010513519.1	4e-52	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-53	Trihelix family protein