PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10447s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 62aa    MW: 6884.21 Da    PI: 10.8164
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10447s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27857150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs++gkl+e +
  Csa10447s010.1  8 KRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELA 57
                    79********************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-34159IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-26158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.254160IPR002100Transcription factor, MADS-box
CDDcd002651.04E-34160No hitNo description
PROSITE patternPS003500256IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-28222IPR002100Transcription factor, MADS-box
PfamPF003192.2E-25955IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282237IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-283758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
ARGKIQLKRI ENPVHRQVTF CKRRTGLLKK AKELSVLCDA EIGVVIFSPQ GKLFELATKG  60
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-17258258Myocyte-specific enhancer factor 2A
3mu6_B2e-17258258Myocyte-specific enhancer factor 2A
3mu6_C2e-17258258Myocyte-specific enhancer factor 2A
3mu6_D2e-17258258Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10447s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161636e-90AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankCP0026846e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF14O236e-90AC012654.2 Arabidopsis thaliana chromosome 1 BAC F14O23 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565022.14e-35AGAMOUS-like 12
RefseqXP_002888841.14e-35agamous-like MADS-box protein AGL12
RefseqXP_013651250.13e-35agamous-like MADS-box protein AGL12
RefseqXP_013651251.13e-35agamous-like MADS-box protein AGL12
RefseqXP_019098679.18e-36PREDICTED: agamous-like MADS-box protein AGL12, partial
SwissprotQ388414e-36AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLM4DI019e-36M4DI01_BRARP; Uncharacterized protein
STRINGBra016128.1-P1e-36(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-38AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]