PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g001910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 595aa    MW: 66174.9 Da    PI: 4.3899
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g001910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08437478144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + I + ++ +Rt++q k+++
   Csa10g001910.1 437 RTRWSKQDTELFYEGIREFGSN-LSMIQHLFP-NRTREQMKLKF 478
                      78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159635.9E-23430514No hitNo description
SuperFamilySSF466896.5E-9431485IPR009057Homeodomain-like
PROSITE profilePS512939.651435486IPR017884SANT domain
SMARTSM007172.9E-7436484IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-5437478IPR009057Homeodomain-like
CDDcd001671.87E-5439479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDLDFDDHPS HHAAPAVRAG TRFKPKGRPQ PKKKQVSFST SQTTLPTNVA KETLSTQSQE  60
GSVSLDGSSA IPSEALPSES NVPESGTIYQ STIETLSEEN VNVVSREVHW STEASVLRAC  120
THVDLGGKRC DDSIDAAASA FPDDSRTQDS TIFRDFVTPE TGEDEGHLDM ETLDIVQEEG  180
TTSSYVQHTG KLQPKPRVLD TVVEEPEPHY SVDGTGYFSM GTNESEVMDN VESRNDFSTY  240
GHLQEEEPNI PEAPRETVPE MEAQNASGRS DNNTGTGEEE NCLGNNTLEV EQSGRGKKKG  300
KSKRASGRKR KNTSGEAPSE KPEKKFKHSS RRQKRTLEKE LLETPDDEIK YLPIRDMLRL  360
VEYKEWLEKK EAKGAVVPPT QESDMNASGN ASGSQYDSQG FDAEDEFGME DSENQEAYVV  420
KPDSPVNYQT YMYKTSRTRW SKQDTELFYE GIREFGSNLS MIQHLFPNRT REQMKLKFKL  480
EERRYPLKLN EALATRPKQL IHFPNVIKKL QEEAAAAKAA EEGEEEVGTE AEETNDVPQN  540
EEEPEKAEET ERASGVDGVK ESDGGDGVRS DGGGDECDDG EGDDDFWNSY KSDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296310KKKGKSKRASGRKRK
2307333RKRKNTSGEAPSEKPEKKFKHSSRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g001910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431876.10.0PREDICTED: protein IWS1 homolog
RefseqXP_010431877.10.0PREDICTED: protein IWS1 homolog
RefseqXP_010431879.10.0PREDICTED: protein IWS1 homolog
RefseqXP_010431880.10.0PREDICTED: protein IWS1 homolog
TrEMBLR0GHJ60.0R0GHJ6_9BRAS; Uncharacterized protein
STRINGXP_010431876.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein