PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g002200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 343aa    MW: 38868.9 Da    PI: 9.5574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g002200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32261319159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Csa10g002200.1 261 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 319
                     59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33246319IPR003657WRKY domain
SuperFamilySSF1182903.53E-28254320IPR003657WRKY domain
PROSITE profilePS5081129.344256321IPR003657WRKY domain
SMARTSM007749.9E-37261320IPR003657WRKY domain
PfamPF031065.0E-25262318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
SHTKLKKNIP QNQNQNFFSL SLSHTHNLIF VTLLRKRTKE MGTINQGISF FDESQTIINP  60
NNSNHLGFFF SFPSHSLSSS SSTSSSSPSS LVSPFLGHHS LNSFLHSNPS SFVNQPQDPI  120
NLMANLPQTL ISSLSSSKQR DDHDGFLDLD HHRLTGGRSS QRPSPNPWAW SSQAGYGCSQ  180
KNNHGSEIDI DDDENEVGHG GGINDEINDH HNHHDTARRH DKHNTASLGV VSSLKIKKLK  240
TRRKVREPRF CFKTLSEVDV LDDGYRWRKY GQKVVKNTQH PRSYYRCTQD KCRVKKRVER  300
LADDPRMVIT TYEGRHLHSP SNHLDDDSLS SSHHSPLSNF FW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25253318974Probable WRKY transcription factor 4
2lex_A2e-25253318974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g002200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211530.0AF421153.1 Arabidopsis thaliana WRKY transcription factor 13 (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431912.10.0PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB71e-169WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLR0F6411e-176R0F641_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010431912.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-128WRKY DNA-binding protein 13