PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 221aa    MW: 24173 Da    PI: 10.781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-1368114354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+ +ErrRR riN  f++Lr++lP++      K +Ka++L ++v+Y ++L
  Csa10g003040.1  68 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 114
                     68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1356120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.00865114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1368119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1068114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-1068119No hitNo description
SMARTSM003534.6E-1271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVLLHHLEQG MMPPIARCYK PTAYSTTMGR NVFFAGAAAA TSSKLFSRGF SATTKPKSKT  60
ESKEAAAKKH SDAERRRRLR INCQFATLRT ILPNLVKQDK ASVLGETVRY FNELKKMVQD  120
IPTTPSLEDS LRLGHCNNNR DLARVVFSCS DREGLMSEVA ESLKAAKTKA VRAEVTVGGR  180
TKCALFVQGV NGNEGLVKLK KSLKPVVNGK SSSEAKKQQQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087268.11e-136PREDICTED: transcription factor bHLH131-like
SwissprotP0CB251e-121BH131_ARATH; Transcription factor bHLH131
TrEMBLD7M9K51e-131D7M9K5_ARALL; Predicted protein
TrEMBLR0GUB71e-123R0GUB7_9BRAS; Uncharacterized protein
STRINGBostr.25542s0212.1.p1e-133(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-98bHLH family protein