PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 254aa    MW: 28967.3 Da    PI: 6.884
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-11140191556
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++ +r+++NRe+A+rsR RK+  i++L++ v  L+ eN++L ++l     + 
  Csa10g003370.1 140 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 191
                     6789*************************************98877655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-10131193No hitNo description
SMARTSM003381.1E-13136200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841138201IPR004827Basic-leucine zipper domain
PfamPF001703.6E-9140185IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-10140191No hitNo description
CDDcd147022.99E-18141192No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLSTVPAFSF SEPGLVNQFS GFQTGFTPWE WDCSDLFFVD QMSLKPAVPS PSYGESDTGS  60
VRINSGSHDM KTGSDESCLG FVKTSPGFDD ANQSVGLLCS QAHEPDSDDP KQLTAITNSG  120
SGEQNHNGKI LTQPEMTEER KRKRMESNRE SAKRSRMRKQ SHIDNLRNQV NRLDLENREL  180
GNRLRLVLHQ LQRVNTDNNR LVTEQEILRL RLSEMRRVLI IRQLQQQQQW ELHNRRMIMT  240
EHNNPSSTID QLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937250.0AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357090.0AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615920.0AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086601.10.0PREDICTED: light-inducible protein CPRF2-like
TrEMBLA0A178UR911e-144A0A178UR91_ARATH; BZIP7
TrEMBLQ9T0621e-144Q9T062_ARATH; BZIP transcription factor-like protein
STRINGXP_010446630.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-115basic leucine-zipper 7