PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g003720.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 9210.95 Da PI: 10.5325

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g003720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.6e-22	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ +r+++f+kR+ng+lKKA+ELS LCd+ v ++ fs++gkl+ + Csa10g003720.1 9 KKIEDRQQRNISFAKRKNGLLKKAYELSLLCDVAVGLLFFSPSGKLFIF 57 68********************************************866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.5E-28	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.287	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-24	2	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-21	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRVKIQMKK IEDRQQRNIS FAKRKNGLLK KAYELSLLCD VAVGLLFFSP SGKLFIFDAK 60 LSIEDIIDKY NSQPIHIIAR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-17	1	74	1	75	MEF2 CHIMERA
6byy_B	2e-17	1	74	1	75	MEF2 CHIMERA
6byy_C	2e-17	1	74	1	75	MEF2 CHIMERA
6byy_D	2e-17	1	74	1	75	MEF2 CHIMERA
6bz1_A	2e-17	1	74	1	75	MEF2 CHIMERA
6bz1_B	2e-17	1	74	1	75	MEF2 CHIMERA
6bz1_C	2e-17	1	74	1	75	MEF2 CHIMERA
6bz1_D	2e-17	1	74	1	75	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g003720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446661.1	8e-47	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q1PFC2	1e-22	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	V4MKU5	9e-33	V4MKU5_EUTSA; Uncharacterized protein
STRING	XP_010446661.1	3e-46	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	6e-25	AGAMOUS-like 66

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]