PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 351aa    MW: 39784.7 Da    PI: 7.4583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31204258256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     +r+rW+++LH++Fv+a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYR++
  Csa10g004230.1 204 QRRRWSQDLHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMH 258
                     8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-17200261IPR009057Homeodomain-like
PROSITE profilePS5129412.598200260IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-28200261IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25204258IPR006447Myb domain, plants
PfamPF002492.1E-7205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLNLNLSIY SLPKPLSQFL DEVSRIDDNK SKLSEIDGYV GRLEEERKKI DVFKRELPLC  60
MLLLNEAIGA LQAEARKGSS VMASNGKFKD GEGAKLETDK KSWMSSAQLW ISNPNSQFQS  120
TNEKDDRCVT QNPFQTCNYP NQGGAFLPFN RPPPPPPPAP LSLMTPTSDM MMDCSRIEQN  180
HHHHHHQFNK PSQLQSHHIQ KKEQRRRWSQ DLHRKFVDAL HRLGGPQVAT PKQIRDLMKV  240
DGLTNDEVKS HLQKYRMHIR KHPLHPSKTL SSSDQPGVLE RESQSLISLS RSDSPQSPLV  300
ARGLFSSNNG GHSSEEAEVD DDEEEEEEKS DGRSCRNETK KKRQVLDLEL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0289850.0BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432113.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB00.0HHO5_ARATH; Transcription factor HHO5
TrEMBLR0GZX20.0R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432113.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]