PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g004310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 227aa MW: 24532.7 Da PI: 4.423

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g004310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	8	40	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ryps +++ LA+++gL+ +qV++WF N R + Csa10g004310.1 8 LRYPSDADKHLLARQTGLSRNQVSNWFINARVR 40 59*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.515	1	44	IPR001356	Homeobox domain
SMART	SM00389	0.0057	1	48	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-12	8	51	IPR009057	Homeodomain-like
CDD	cd00086	3.88E-11	9	45	No hit	No description
Pfam	PF05920	3.8E-13	10	40	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	9.7E-18	10	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSFSGLFLRY PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQESKERERE 60 EELEVNEEDQ ETKNSNNDKS TKSNNNESNF TASRTTSQTP IITAPDVSDA DADAAVAVAT 120 GHRLRSDINA YENDPSSLLL PSSYSNAAAS SADLGSRYGG SAAFSAVATC QQGVGGFDDD 180 ADMGGVNVIR FGTNPTGDVS LTLGLRHAGN MPDKDPSFCV RDFGGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g004310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF173816	0.0	AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBank	AY050459	0.0	AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432123.1	1e-168	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	9e-92	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1J3JVU3	1e-104	A0A1J3JVU3_NOCCA; BEL1-like homeodomain protein 2 (Fragment)
TrEMBL	R0GH26	1e-103	R0GH26_9BRAS; Uncharacterized protein
TrEMBL	R0GY96	1e-104	R0GY96_9BRAS; Uncharacterized protein
STRING	XP_010432123.1	1e-168	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	3e-70	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]