PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 487aa    MW: 53973.3 Da    PI: 4.9003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3335.7e-1021234852374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eALa+ l++      +  p + +s+++ ++++ a k +s +sPi+ fsh
  Csa10g004520.1 123 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPSGRPLQRAAFYFKEALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSH 212
                     678*************************99*************************.....778899999999*********************** PP

            GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++f++++++ k++e
  Csa10g004520.1 213 FTANQAILDSLSSQsasPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLLKTFE 305
                     ***********999777899*************************************66..9********************************* PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres 279
                     +l+++++r+ +gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p+ +
  Csa10g004520.1 306 MLSFKAIRFVEGERTIVLISPAIFRRL-------SGIADFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAPPGD 393
                     **************************9.......34556*******************76677899***************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++ vE+++l+++i+ +v ++ ++   r++   +Wre + +aG++p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
  Csa10g004520.1 394 LVKKIVEAFVLRPKISAAVETAADR---RNTGETTWREVFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485
                     ********************99998...888899************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.86796465IPR005202Transcription factor GRAS
PfamPF035142.0E-99123485IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKIPASSPQD TTNNNSTDGN HLSMDEHVMR SMDWDSIMKE LELDDDSAPN SLKTGFTTTT  60
ATSDSTILPL YAVDSNLPGF PDQIQPSDFE SSTDIVYPGQ NQQPTGYGFN SLDGVDNGGF  120
DFIEDLIRVV DCVESDELQL AQVILSRLNQ RLRSPSGRPL QRAAFYFKEA LASLLTGTNR  180
NPIRLSSWSE IVQRIRAIKE YSGISPIPLF SHFTANQAIL DSLSSQSASP FVHVVDFEIG  240
FGGQYASLMR EIAEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL  300
LKTFEMLSFK AIRFVEGERT IVLISPAIFR RLSGIADFVN NLRRVSPKVV VFVDSEGWTE  360
IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE AFVLRPKISA AVETAADRRN  420
TGETTWREVF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA  480
TSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2711648413378Protein SCARECROW
5b3h_A4e-2712848424377Protein SCARECROW
5b3h_D4e-2712848424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankBT0118070.0BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432142.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0F5610.0R0F561_9BRAS; Uncharacterized protein
STRINGXP_010432142.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]