PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 226aa    MW: 26192 Da    PI: 9.3588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.3e-211562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +  n+ n qvtfskRr g++KKA+EL++LC+ae+++i+fs+  k++ +
  Csa10g004660.1 15 KMRNEKNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGRKVFSF 62
                    56799************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.955666IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-31665IPR002100Transcription factor, MADS-box
CDDcd002656.86E-36783No hitNo description
SuperFamilySSF554556.67E-27792IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-18828IPR002100Transcription factor, MADS-box
PfamPF003197.1E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKSNKGRQK IEMKKMRNEK NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGRKVF  60
SFGHPGVREL IYRFTNFNHN SLIPHQPNNN NSLIPHQPNN NLQLVESRPD INVQYLNEML  120
THVLAKQEKA EHNRMTLDMV KQSRERRGIC WYEKDVKELD LTETDDLISA LQNVKKTLVS  180
DMSHYPQLNV SHHNYMGENT VFGGDRNVDV GGIDLFDQRM EYIQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-18794184Myocyte-specific enhancer factor 2A
3kov_B4e-18794184Myocyte-specific enhancer factor 2A
3kov_I4e-18794184Myocyte-specific enhancer factor 2A
3kov_J4e-18794184Myocyte-specific enhancer factor 2A
3p57_A4e-18794184Myocyte-specific enhancer factor 2A
3p57_B4e-18794184Myocyte-specific enhancer factor 2A
3p57_C4e-18794184Myocyte-specific enhancer factor 2A
3p57_D4e-18794184Myocyte-specific enhancer factor 2A
3p57_I4e-18794184Myocyte-specific enhancer factor 2A
3p57_J4e-18794184Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432164.11e-125PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-55AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM51e-87A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232221e-87O23222_ARATH; MADS-box protein
STRINGXP_010432164.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-92M-type_MADS family protein
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]