PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 82aa    MW: 9442.21 Da    PI: 6.8023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT  E +l+ +a +++  +   +W+ +ar +g  +++++++ ++ 
   Csa10g004700.1 11 TWTRKENKLFERALAKYDQDtpdRWHNVARAVG-SKSAEEVRRHYE 55
                     7******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.991762IPR017884SANT domain
SMARTSM007178.5E-10860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-71063IPR009057Homeodomain-like
CDDcd001671.63E-81158No hitNo description
PfamPF002494.8E-81155IPR001005SANT/Myb domain
SuperFamilySSF466896.21E-141264IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSTSYNT TWTRKENKLF ERALAKYDQD TPDRWHNVAR AVGSKSAEEV RRHYELLIRD  60
VNDIDSGRYP DPNYPSDGNN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-27180179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0107701e-82BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds.
GenBankBT0112551e-82BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432165.18e-55PREDICTED: protein RADIALIS-like 3
RefseqXP_010432166.18e-55PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-42RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL08e-46R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432165.13e-54(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-33RAD-like 6