PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g006850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 288aa    MW: 32141.2 Da    PI: 9.3322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g006850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017162184123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F ++  L  H  +H
  Csa10g006850.1 162 FECGGCKKVFGSHQALGGHRASH 184
                     89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-77498IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41174101IPR007087Zinc finger, C2H2
SMARTSM003550.0377496IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-77596No hitNo description
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-7157184No hitNo description
PfamPF139123.4E-8161185IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64162189IPR007087Zinc finger, C2H2
SMARTSM003553162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
PfamPF139125.4E-11222247IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-5222248No hitNo description
PROSITE profilePS501579.494223250IPR007087Zinc finger, C2H2
SMARTSM003550.11223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTNYNSYYDP NFHIPLHSSN ARNPKPNLQF ALSPSYDHSP KKKRTKTIAS SSSSSPKKPR  60
YTKKPDPNAP KITRPCTECG RQFWSWKALF GHMRCHPERQ WRGINPPPNY RNPTTAASSK  120
QLNQIRSQNW VSFMSEEDHE VASCLLMLSN GTPTSSSTSE RFECGGCKKV FGSHQALGGH  180
RASHRNVKGC FAITNVNDYP MTVTTSSDHD HHQGKIVMFS GHHKCNICFR VFSSGQALGG  240
HMRCHWEREE EPIIGVVGAL DLNVPATMHD LSTSDTLGCS LDLRLSL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g006850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937190.0AB493719.1 Arabidopsis thaliana At4g35280 mRNA for hypothetical protein, partial cds, clone: RAAt4g35280.
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4468960.0DQ446896.1 Arabidopsis thaliana clone pENTR221-At4g35280 zinc finger family protein (At4g35280) mRNA, complete cds.
GenBankDQ6532460.0DQ653246.1 Arabidopsis thaliana clone 0000012370_0000008938 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436252.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-166ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A178UTT41e-164A0A178UTT4_ARATH; DAZ2
STRINGXP_010436252.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-156C2H2-like zinc finger protein