PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g007140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 270aa MW: 29442.7 Da PI: 5.1811

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g007140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.3e-11	94	141	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 k e+r NReA r++R++Kka+ + Le++v+ L a N++L k+l++ Csa10g007140.1 94 KGEKRPLGNREAVRKYREKKKAKAASLEDEVARLRAVNQQLVKRLQNQ 141 6799999***********************************999863 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-11	90	157	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	92	158	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-13	93	158	No hit	No description
Pfam	PF07716	6.7E-14	94	147	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.06E-7	94	141	No hit	No description
CDD	cd14686	1.75E-13	96	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEDGELEFSN QEVFSSSDMG ELPPSNCSMD SFFDGLLMDT TNANAACTHT HTCNPTGPEN 60 THTHTCFHVH TKILPDESDE KVSTDDTAES CGKKGEKRPL GNREAVRKYR EKKKAKAASL 120 EDEVARLRAV NQQLVKRLQN QATLEAEVSR LKCLLVDLRG RIDGEIGSFP YQKPMSANIP 180 SFSHMMNPCN VQCDDEVYCP QNGFGGNTQE GASINDQGLG GCDFDQLQCL ANQNLGANVN 240 GSFNNANASV SNKRKGGTFI PSSFLFKSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g007140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022023	0.0	AL022023.1 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
GenBank	AL035522	0.0	AL035522.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII project).
GenBank	AL161586	0.0	AL161586.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432347.1	0.0	PREDICTED: basic leucine zipper 19-like
Refseq	XP_010432348.1	0.0	PREDICTED: basic leucine zipper 19-like
Swissprot	Q8VY76	1e-174	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	R0GK70	1e-178	R0GK70_9BRAS; Uncharacterized protein
STRING	XP_010432347.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-158	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]