PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g008210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 456aa MW: 49838.5 Da PI: 10.1485

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g008210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.6	1.3e-13	377	421	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ Csa10g008210.1 377 RRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQ 421 69*************************************998764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-14	373	438	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	375	420	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-13	377	433	No hit	No description
SuperFamily	SSF57959	6.88E-10	377	426	No hit	No description
CDD	cd14707	9.88E-26	377	431	No hit	No description
Pfam	PF00170	1.3E-11	377	430	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	380	395	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MMGSRTNLKN FVDGLTDEAG MNPKQQPMMG SSTLPLTRQN SVFSLTFDEF QNSWGGGIGK 60 DFGSMNMDEL LKNIWTAEES HSLMGNNTGF NNINNGSNNG NAVINSNGGV SVVGMGGEIG 120 GGFFTGGSLQ RQGSLTLPRT ISQKTVDDVW KELMKEDDIG NGVANVGTSG IPQRQQTLGE 180 MTLEQFLLRA GVVREEPPQV QQPVNNFNGG FYGFGSNAGL GTTPTMIGVN QPHSFAGNGA 240 VVRPDLLTTL TQPLQMQQSQ RVQQPQPLIQ KQERPFPKQS TIAFSNTVDA VNRSQPVTQF 300 QEVKPSILGK RNHPMDNNLL QAVDFKTGVT VAAVSPGSQM SPDLTPKSAL DASLSPVPYM 360 FGRARKSGAV LEKVIERRQK RMIKNRESAA RSRARKQAYT MELEAEIAQL KELNEELQKK 420 QVAIMEKQKN QLLEPLRQPM GCKRQCLRRT LTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MMGSRTNLKN FVDGLTDEAG MNPKQQPMMG SSTLPLTRQN SVFSLTFDEF QNSWGGGIGK  60
DFGSMNMDEL LKNIWTAEES HSLMGNNTGF NNINNGSNNG NAVINSNGGV SVVGMGGEIG  120
GGFFTGGSLQ RQGSLTLPRT ISQKTVDDVW KELMKEDDIG NGVANVGTSG IPQRQQTLGE  180
MTLEQFLLRA GVVREEPPQV QQPVNNFNGG FYGFGSNAGL GTTPTMIGVN QPHSFAGNGA  240
VVRPDLLTTL TQPLQMQQSQ RVQQPQPLIQ KQERPFPKQS TIAFSNTVDA VNRSQPVTQF  300
QEVKPSILGK RNHPMDNNLL QAVDFKTGVT VAAVSPGSQM SPDLTPKSAL DASLSPVPYM  360
FGRARKSGAV LEKVIERRQK RMIKNRESAA RSRARKQAYT MELEAEIAQL KELNEELQKK  420
QVAIMEKQKN QLLEPLRQPM GCKRQCLRRT LTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g008210.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432479.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6
Refseq	XP_010432481.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6
Refseq	XP_019086606.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6
Swissprot	Q9M7Q3	0.0	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	R0F7H3	0.0	R0F7H3_9BRAS; Uncharacterized protein
STRING	XP_010432479.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	0.0	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]