PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g009530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 95aa    MW: 10747.5 Da    PI: 10.6935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g009530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-181767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+ +++g
  Csa10g009530.1 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAAMSIKG 67
                    68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-121767IPR001471AP2/ERF domain
SMARTSM003807.1E-341881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-321876IPR001471AP2/ERF domain
PROSITE profilePS5103222.6031875IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-211875IPR016177DNA-binding domain
PRINTSPR003671.7E-101930IPR001471AP2/ERF domain
CDDcd000185.50E-311977No hitNo description
PRINTSPR003671.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MADSSSDKEK KESSMQPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAMRAHDV  60
AAMSIKGTSA ILNFPELSDL LPRPVSLNPR DVLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2019801577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g009530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615824e-98AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0889184e-98AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBankBT0029244e-98BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankBT0043434e-98BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankCP0026874e-98CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432661.18e-62PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0805e-58ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLD7M9P16e-56D7M9P1_ARALL; Uncharacterized protein
STRINGXP_010432660.13e-61(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.19e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]