PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g009930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 230aa    MW: 26037.2 Da    PI: 10.2817
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g009930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind44.15.6e-1481042101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTH.....HHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvL.....pkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                     F + lye+++d++l+++isw ++++sf++++++e+ +k++     ++    s+++ F    + YgFk+vk + +         eF + +F +gk 
  Csa10g009930.1   8 FYTCLYEVVNDHSLDSIISWGKSNHSFIIWNPRELDSKLIsisrpSRRLPCSSLKKFFHDVKFYGFKRVKGSPR--------LEFGNAYFVRGKP 94 
                     8889*********************************99855443356777888999************99885........6************ PP

                     XXXXXXXXXX CS
    HSF_DNA-bind  92 ellekikrkk 101
                     ell+k+++k+
  Csa10g009930.1  95 ELLQKMQQKS 104
                     *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-84103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-165102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-167103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.1E-158103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF533831.36E-10137228IPR015424Pyridoxal phosphate-dependent transferase
Gene3DG3DSA:3.90.1150.102.7E-14138228IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADMVIPFYT CLYEVVNDHS LDSIISWGKS NHSFIIWNPR ELDSKLISIS RPSRRLPCSS  60
LKKFFHDVKF YGFKRVKGSP RLEFGNAYFV RGKPELLQKM QQKSFDKNLR KYQAAITAEN  120
QAIKDAKDAE ARLQHLREKS AYVPGGTRIG GSPAMTTRGL SEKDFVAVVD LIKEGVEIAI  180
EAMMKLVPGS KLQEFTKLVT SPEFPLKEWV KSLKQRVESF TSRFSIPGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ccz_A2e-24138229366455Serine hydroxymethyltransferase
6ccz_B2e-24138229366455Serine hydroxymethyltransferase
6cd0_A2e-24138229366455Serine hydroxymethyltransferase
6cd0_B2e-24138229366455Serine hydroxymethyltransferase
6cd0_C2e-24138229366455Serine hydroxymethyltransferase
6cd0_D2e-24138229366455Serine hydroxymethyltransferase
6cd1_A2e-24138229366455Serine hydroxymethyltransferase
6cd1_B2e-24138229366455Serine hydroxymethyltransferase
6cd1_C2e-24138229366455Serine hydroxymethyltransferase
6cd1_D2e-24138229366455Serine hydroxymethyltransferase
6cd1_E2e-24138229366455Serine hydroxymethyltransferase
6cd1_F2e-24138229366455Serine hydroxymethyltransferase
6cd1_G2e-24138229366455Serine hydroxymethyltransferase
6cd1_H2e-24138229366455Serine hydroxymethyltransferase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g009930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432706.14e-99PREDICTED: heat stress transcription factor A-4a-like
STRINGXP_010432706.11e-98(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-16Winged helix-turn-helix transcription repressor DNA-binding