PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 192aa    MW: 21622.9 Da    PI: 8.8665
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind57.92.7e-18231162101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F  +ly+il+d++++++isw e+g+sf+++d++ef++++L k     +f+ F   L+ +gFkkv+++++         e++++ F +g+ +   +
  Csa10g010310.1  23 FPCELYKILNDPKTNSVISWGEEGKSFIIWDPQEFSRDLLFKALYLLSFSLFETRLKAFGFKKVDSDSAA------HFEYANDDFVRGEPKRALE 111
                     7789***************************************99*********************9977......89*************9999 PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+++ 
  Csa10g010310.1 112 IQKRY 116
                     99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-1619115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-2122115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.05E-1722109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-1823115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-52346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-57486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGGNGYTFEH PPLKKLGPRR RYFPCELYKI LNDPKTNSVI SWGEEGKSFI IWDPQEFSRD  60
LLFKALYLLS FSLFETRLKA FGFKKVDSDS AAHFEYANDD FVRGEPKRAL EIQKRYMQRF  120
GPASPAYTPM VIDPAALELE MSRPSSLALL PPGTLGPIPS LQDPVALKAY INDAWYRAVA  180
MPKDPLTAAE K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g010310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432762.11e-139PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_010432763.11e-139PREDICTED: heat stress transcription factor B-2b-like
STRINGXP_010432762.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-21HSF family protein