PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 258aa    MW: 28523.9 Da    PI: 6.5223
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.7e-15141189349
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLe..ekvkeLeaeNkaLkkel 49 
                     +lkr rr+++NRe+ArrsR+RK++++   e   ++++L++eN++L k+l
  Csa10g010830.1 141 DLKRIRRMYSNRESARRSRRRKQEYLVDHEsqGRFDSLKGENSTLYKQL 189
                     79************************86652279***********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-9139214IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-9140189No hitNo description
PfamPF001706.3E-12141189IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-8142189No hitNo description
PROSITE patternPS000360146161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGMKRSASSA LSRQESILDT SPLDPSFDLT NRGSLWFFPS VASPVRMDYT SELRDSLLWS  60
EGLIPTGCFR DAQSSICVLM FTCIALIWKE NLSADSPVSA NKPEARGGAR RTTSASSHDH  120
SDEEDAETEA GQSEMTNVPN DLKRIRRMYS NRESARRSRR RKQEYLVDHE SQGRFDSLKG  180
ENSTLYKQLI DASAGTNNRV LKSDVETLRV KVKLAEDLVV GGSLTSSLNQ LLQTYLSPPP  240
HSINSLQSTV TNLCSLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162RRSRRRKQ
2157162SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g010830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3102231e-134AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds.
GenBankAK2268731e-134AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470868.11e-123PREDICTED: basic leucine zipper 9-like
SwissprotQ9FUD31e-112BZIP9_ARATH; Basic leucine zipper 9
TrEMBLR0GW391e-112R0GW39_9BRAS; Uncharacterized protein
STRINGXP_010470868.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-80basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]