PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g017300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 598aa    MW: 67479.3 Da    PI: 9.5656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g017300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147798223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC++C++ F ++ n++rH r+H
  Csa10g017300.1 77 KCEKCNMEFYSPVNYRRHHRMH 98
                    7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.30576103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MTIESNTVFR LILNSMELVK QDGNDSLDML IRRAVGKDPF LSFPRPENTP VQLFQLLHTL  60
ERPGWPLLTP LKIQMQKCEK CNMEFYSPVN YRRHHRMHRR QRKHAKDSGK ERDALGAFWN  120
KLAAIDAKEI LSLKSMMLED VPGVSVESGL MSLIEKPGYT ALPQYYLRAG SGILDILHAR  180
PSSFPISSQE LFSILDDASE KTFLCNEAAP MQKYIFDGEI GKNILEPKNV VACASFLLEQ  240
RLIKAWLADK DAEALRCQNL LVEEEEAARR RQAELLERKK RKKLRQKEQR EKDQKKDAKE  300
DESTTSEEQQ YPAESSSQLP VASDSEAQRP DSIPIDASSS LEDPQVLETN DGRNGECQAP  360
MVDDDGFGNG QNMERQNGRR SNGFHANHAP KLGMRKNGIN RDTRVNTAKV WSRKSVNPKS  420
ISQHAAFTQL DQTRNSELRI GSFSLTIPKG GLNGEHNQTK CSEEDRRSKT VEVKPTTEQA  480
TVKIWRPVSS QGRKVLAVHE NADKGDKNSN PTAPEVKTTH HHISVQFNNH KAKEFLAKRW  540
KEATSGEHVT LVLSQETDIS GNNTHESSNG VITARPKPRM KPEKGTKVKY VPKQRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268282RRRQAELLERKKRKK
2276283ERKKRKKL
3278282KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g017300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433611.10.0PREDICTED: uncharacterized protein LOC104717700
TrEMBLR0GHK90.0R0GHK9_9BRAS; Uncharacterized protein
STRINGXP_010433611.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein