PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g017500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 431aa    MW: 46853.1 Da    PI: 7.3819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g017500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08108130326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+   G C+yGd+C++ H+
  Csa10g017500.1 108 EKLCKFWVD-GNCPYGDKCRYLHC 130
                     579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852753IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6105129IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6107131IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7109127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.0E-39128422IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6136175IPR001680WD40 repeat
SuperFamilySSF509786.13E-40136424IPR017986WD40-repeat-containing domain
PfamPF004001.9E-4139175IPR001680WD40 repeat
PROSITE profilePS5008213.316143184IPR001680WD40 repeat
PROSITE profilePS5029412.473143342IPR017986WD40-repeat-containing domain
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM003201.7215252IPR001680WD40 repeat
SMARTSM00320310259293IPR001680WD40 repeat
SMARTSM003209.5E-4296333IPR001680WD40 repeat
PfamPF004000.0068298332IPR001680WD40 repeat
SMARTSM0032014337380IPR001680WD40 repeat
SMARTSM003202.8383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDLDMNGGNK RVFHRLGGGN TNRPKTDSNQ KVCFHWRAGR CNRYPCPYLH RELPGPGPVA  60
TSSSSTNKRV ADESGFAGPS HRRGPGFSGS ANKTWERFGG NRTVTKTEKL CKFWVDGNCP  120
YGDKCRYLHC WSKGDSFSLL TQLDGHQKVV TGIALPSGSD KLYTASKDET VRIWDCASGQ  180
CTGVLNLGGE VGCMISEGPW LLVGMPNLVK AWNIQNNADL SLTGPVGQVY SLVVGTDLLF  240
AGTQDGSILV WKYNSTTSCF DPAASLKGHT LAVVTLYVGA NRLYSGAMDN VWSLDNLQCI  300
QTLTEHTSVV MSLICWDQFL LSCSLDNTVM IWAATEGGNL EVTYTHKEEY GVLALCGVHD  360
AEAKPVLLCS CNDNSLHLYD LPSFTERGKI LAKQEIRSIQ IGPGGIFFTG DGSGQVKVWK  420
WSTEPTVILS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-171404238320Tako8
6g6n_A8e-171404238320Tako8
6g6n_B8e-171404238320Tako8
6g6n_C8e-171404238320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g017500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433635.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010433635.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1