PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g017570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 125aa    MW: 14432.6 Da    PI: 11.0643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g017570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-142576255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  h+e+E++RR ++ s ++ Lr+llP  +   ++K s ++ +  Av+YIk+Lq
  Csa10g017570.1 25 KIVHKEIEKQRRLEMASLYASLRSLLPLEF--IQGKRSTSDQVNGAVNYIKYLQ 76
                    678*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-142289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-82380No hitNo description
PROSITE profilePS5088812.8742375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-112576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-112589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-52981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNDLPEKRRR PSKKLRVSSD QNMKKIVHKE IEKQRRLEMA SLYASLRSLL PLEFIQGKRS  60
TSDQVNGAVN YIKYLQRNVK DMSSKRDDLM LLSGRSFGSC NEQGWNVISK CRDSSVFGRP  120
RNRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g017570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448440.12e-62PREDICTED: transcription factor bHLH118
SwissprotQ9STJ79e-46BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A1P8B7L43e-49A0A1P8B7L4_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGXP_010448440.16e-62(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.14e-48bHLH family protein