PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g018550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 262aa    MW: 28490.9 Da    PI: 7.7795
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g018550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15213249135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Csa10g018550.1 213 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 249
                     ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.8E-1476111IPR010399Tify domain
PROSITE profilePS5132014.62476111IPR010399Tify domain
PfamPF062001.6E-1278110IPR010399Tify domain
PfamPF062032.4E-14145187IPR010402CCT domain
PROSITE profilePS5101711.985145187IPR010402CCT domain
SuperFamilySSF577164.37E-12206256No hitNo description
SMARTSM004011.2E-14207260IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.515207261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15211254IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.81E-16212260No hitNo description
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
PfamPF003204.2E-13213249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MYGRHSQPVL IPNNDSAGGE DHVSASATSG HIPYDDMDEI PHPDSIYGGT GSDLIPDGSQ  60
LVAHRSEPSE LLVSRPPEGA NQLTISFRGQ VYVFDAVGPD KVDAVLSLLG GSTELASGPQ  120
VMELAHQQNH MPVVEYQSRC SLPQRAQSLD RFRKKRNARC FEKKVRYGVR QEVALRMARN  180
KGQFTSSKMT DGAYNSGTDQ DSAQDDGHPE ISCTHCGISS KCTPMMRRGP SGPRTLCNAC  240
GLFWANRGTL RDLSKKRISC L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g018550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353100.0AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439027.10.0PREDICTED: GATA transcription factor 25-like
RefseqXP_010439028.10.0PREDICTED: GATA transcription factor 25-like
RefseqXP_010439029.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-174GAT25_ARATH; GATA transcription factor 25
TrEMBLR0H0401e-177R0H040_9BRAS; Uncharacterized protein
STRINGXP_010439027.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-177GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]