PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g020470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 160aa MW: 17844.2 Da PI: 6.5027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g020470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.3	5e-28	6	104	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 Ca Ckvl+++C ++C++ +fp+++ +f+ v+++FGa+ v ++ ++l +ee+r++a++sl+y A+ar rdPv+G +g+++++++ l+ +++e++ Csa10g020470.1 6 CAICKVLKKNCDSNCIYKAHFPSND-TRFEDVNQIFGAEIVANIFNSLeSEEQRKIAANSLCYAAKARRRDPVSGILGMVQHYESILNYVEQEIK 99 ********************998.89****************55566**************************************** PP DUF260 96 llkee 100 l+++e Csa10g020470.1 100 LAENE 104 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.177	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-25	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MNLNCCAICK VLKKNCDSNC IYKAHFPSND TRFEDVNQIF GAEIVANIFN SLESEEQRKI 60 AANSLCYAAK ARRRDPVSGI LGMVQHYESI LNYVEQEIKL AENELKTNVG PDQVPKYVDI 120 PIPDDFLVKR EDRKMGDGHR VNDASTSAGP SSTLPKKHE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-16	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-16	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g020470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010436437.1	1e-116	PREDICTED: LOB domain-containing protein 32-like
Swissprot	O49651	6e-47	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	R0GTP6	2e-67	R0GTP6_9BRAS; Uncharacterized protein
STRING	XP_010436437.1	1e-116	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	3e-49	LOB domain-containing protein 32