PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g022530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 192aa    MW: 21680.7 Da    PI: 8.1147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g022530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-111865655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +E++RR +++s ++eL +llP+ +   + + l+  + L +A +YIk+Lq
  Csa10g022530.1 18 KTVEKNRRMQMKSLYSELTSLLPHhS---SREPLTLPDQLDEAANYIKKLQ 65
                    789*********************44...7777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.76E-51169No hitNo description
PROSITE profilePS5088811.5151264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-101578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-91779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00281870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-71865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEPSHSNTAQ SRRSVDRKTV EKNRRMQMKS LYSELTSLLP HHSSREPLTL PDQLDEAANY  60
IKKLQVNVEK KRERKSKLVA TANSEKLNSA GSSLVSSSVD VSVPRKLPRI EIQESGSIFH  120
IFLVTSLEHK FMFCEIVRVL TEELGAEITH AGYSIVEDAV FHTLHCKVEE CDYGARSQIP  180
ERLEKFVNSV N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g022530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-179AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434251.11e-139PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-113BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L91e-116R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010434251.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-114bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]