PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g023200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 778aa    MW: 90340.1 Da    PI: 6.6998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g023200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.22.4e-2734136190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                     +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g+++++ ++             +++ r +r++++t+Cka+l+vk+++dg+w + +l+
  Csa10g023200.1  34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTDIDTtglgidgfnipqaRKRGRINRSSSKTDCKACLHVKRRQDGRWIIRSLV 128
                     6******************************************99999*********998889999***************************** PP

            FAR1  83 leHnHela 90 
                     +eHnHe++
  Csa10g023200.1 129 KEHNHEVF 136
                     *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2534136IPR004330FAR1 DNA binding domain
PfamPF105516.4E-24225316IPR018289MULE transposase domain
PROSITE profilePS5096610.101509545IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6520547IPR006564Zinc finger, PMZ-type
PfamPF044341.0E-5522543IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MLSGECSNVQ LDDHRTNLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTDIDT TGLGIDGFNI PQARKRGRIN RSSSKTDCKA CLHVKRRQDG  120
RWIIRSLVKE HNHEVFTGQA KSLRELGGRK KLEKQNGAIV KEVKIRKLLA LEDGDVERLL  180
NFFTDMQVEN PFFFYSIDLS EEQSLRNIFW VDAKGRLDYT CFCDVVSIDT TFIKNEYKLP  240
LMAFTGVNHH GQFLLLGCGL LLTDESKSGF VWAFRAWLKA MHGCQPRVIL TKHDQMLKEA  300
VSEVFPSSSH CFFMWDTLGQ MPEKLGHVMR QEKSFMDEIN DAIYGSWKSD GFEKKWWEVV  360
DRFHVRDNAW LQSLYEDREH WVPVYMKDVS LAGMCTAQRS DSVNSVFDKY IQRKTTLKSF  420
LDQYKTKIQE RYEEEEKAEI ETLYKQPGLK SPSPFGKQMA EVYTREIFKK FQVEVLGGVA  480
CHPKKESEED DEVNKRTFRV QDYEQNRAFV VGWDSESSEV VCSCRLFEFK GFLCRHAMIV  540
LQMSGELSIP SQYVLKRWTK NAKSRINMEL DQIDVEATKA QRYMDLCLRS LKLSEEASLS  600
EESYNAVINV LNEALRKCEN TSNLIQNVEE SESVIAQDLP IHEEQNNTYE MNKDDNVADT  660
GQEHSLQEVW KVTALQEQRN RYSILDDYLS SQHMPHEMGQ INPMASNRNG YCTVHPNIHS  720
LGQSITHQRL YGTEQLSFRP EAIYERLQDM GQSDVRHHPQ QHCNASKHQQ FNRNFTH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154GRKKLEKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g023200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216370.0AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBankAL1615520.0AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434337.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2
RefseqXP_019086870.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLR0GY700.0R0GY70_9BRAS; Uncharacterized protein
STRINGXP_010434336.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1