PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g024790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 216aa    MW: 25215.2 Da    PI: 7.581
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g024790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind36.51.3e-11151201103
                     HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHH..HHHHHHTTEEE---SSBTTTT..XTTSEEEEESXXXXXXX CS
    HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSF..vRQLnmYgFkkvkdeekksks..kekiweFkhksFkkgkk 91 
                     +F++k+y+++++++++++isw  ng sf+v+++ e  +++Lpky   snf  F  ++ L +    +v   ++  k+  ++++ e++ + F k++ 
  Csa10g024790.1  15 EFVTKVYKMVDEPSTDSIISWGPNGVSFIVSKPLECCRDLLPKYLGLSNFILFqnYKTLCLDVNVMVCCARGL-KKvvESRQLEYACEDFVKDQP 108
                     6*************************************************99966444444333333333332.222347778999999****** PP

                     XXXXXXXXXXXX CS
    HSF_DNA-bind  92 ellekikrkkse 103
                     e leki ++++e
  Csa10g024790.1 109 ERLEKIGKRQEE 120
                     *****9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-1012117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.39E-1313116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-1514116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-1016116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-61639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-65466IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDPGPGAVER KRCVEFVTKV YKMVDEPSTD SIISWGPNGV SFIVSKPLEC CRDLLPKYLG  60
LSNFILFQNY KTLCLDVNVM VCCARGLKKV VESRQLEYAC EDFVKDQPER LEKIGKRQEE  120
KLNADCDKLH EARMKQMRSC KTVQEWELVR KRSLKEMLSK MDEKYSKDVE RFMQTVAYER  180
EWRREAFPKE LEDRLQLVLD SLKDLINSTN DLVQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g024790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439719.11e-129PREDICTED: heat stress transcription factor A-4b-like
TrEMBLR0H2571e-71R0H257_9BRAS; Uncharacterized protein
STRINGXP_010439719.11e-129(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-17heat shock factor 1