PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 526aa    MW: 58856.5 Da    PI: 6.562
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.84.4e-27285338256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH++Fv+aveqL G+e+A+P++ilelmkv+ Lt+++v+SHLQkYR++
  Csa10g027190.1 285 KKVDWTPELHKKFVQAVEQL-GIEQAIPSRILELMKVNTLTRHNVASHLQKYRMH 338
                     689*****************.********************************96 PP
2Response_reg28.48.3e-113913215109
                     HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
    Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                     r+ le+ +y +v++++d +eal  + ++   +++ ++ ++     +G+++l+    +++ lp i++++    +++ +++ +Ga +fl Kp +pe+
  Csa10g027190.1  39 RSKLESTDY-IVTTFTDETEALSAVFKNPesFHIAIVEVNTNAeKEGFKFLEA---AKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEK 129
                     6678999**.**************9555556*********9997899999875...55699********************************** PP

                     HHH CS
    Response_reg 107 lvk 109
                     l +
  Csa10g027190.1 130 LKN 132
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011020.89624138IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.56E-1236140IPR011006CheY-like superfamily
PfamPF000722.5E-737132IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.1E-1438145No hitNo description
CDDcd001561.23E-642137No hitNo description
PROSITE profilePS5129415.915281340IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-26283340IPR009057Homeodomain-like
SuperFamilySSF466891.52E-18283341IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24285338IPR006447Myb domain, plants
PfamPF002495.8E-8287336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MFITANDLSK WENFRKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVT TFTDETEALS  60
AVFKNPESFH IAIVEVNTNA EKEGFKFLEA AKDVLPTIMI STDHCITTTM KCIALGAVEF  120
LQKPLSPEKL KNIWQHVVHK AFNDGGSKPV KESVVSMLHL DTNMTIDEKD PAPSTPQLKQ  180
VSRLGDCQEN INCSMENVNS STEKDNMEDQ DIGESKSVDT TNRILDDNKV VVKEERGDSE  240
KEEQGETGDL ESERTDLVNC HKKEDDSKPV NKSSKNLSGN KTTRKKVDWT PELHKKFVQA  300
VEQLGIEQAI PSRILELMKV NTLTRHNVAS HLQKYRMHRK NSLPKDDHNQ RWAHSRENQR  360
PIQRNINGFQ QQQRPVMAYP VWGLPSIHHP PRAIPPLWPP PLHCAGQPPP WHWKPPYPTV  420
NGNAWGCPVG QPITGSYYTP NITAGGYQYT NGVETGFKMM PATQPDEEML DQVVKEAISK  480
PWMPLPLGLK PPSPESVLAE LSRQGIPAVP SSSSSFLING SHRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16284340157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434586.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
RefseqXP_019086835.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLR0F4Q40.0R0F4Q4_9BRAS; Uncharacterized protein
STRINGXP_010434586.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]