PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 445aa    MW: 49908.8 Da    PI: 5.022
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.2e-34311222103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++ ++sws ++nsf+++d++efa+ +Lpk+Fkh+n++SF+RQLn+YgFkkv+++           eF+++ F +g+k+ll+k
  Csa10g027600.1  31 FLSKTYDMVEDPATDAIVSWSPTNNSFIIWDQSEFARYLLPKHFKHNNLSSFIRQLNTYGFKKVSERY----------EFANEDFLRGQKHLLKK 115
                     9********************999****************************************9865..........8**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i rk+s+
  Csa10g027600.1 116 ISRKRSA 122
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5527119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3628119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3328119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-193154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3031119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDGVVAGGES VPPRNPHPAT LLSANALPPP FLSKTYDMVE DPATDAIVSW SPTNNSFIIW  60
DQSEFARYLL PKHFKHNNLS SFIRQLNTYG FKKVSERYEF ANEDFLRGQK HLLKKISRKR  120
SAQGHGGSST SNTQSHQLSQ GQGSLAALSS CVEVGRFGLE EEVEQLKRDK NVLMQELVKL  180
RQQQQTTDSK LQVMVKRLQV MELRQQQIMS FLAKAVQNPT FLSQFIQKQA DSNNMHVTEA  240
NKKRRLREDT TENQSHIHSS AASDGHGQIV KYQPVRSDSM MWNMMKTDDE YQFLDGFPSP  300
NRVSGVTLQE VLPRTTSGQS QAYAPAASGQ HLSYLPSTST PLPDTVMPQL TRESINDFPA  360
ENYMDTENIV SEPFISPSPF LDGIEDPDID ELVDNCELLE ECLAEIPVLG DETATLENSN  420
NTNDRHMDKF IEELGLLTSK TEQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2931196129Heat shock factor protein 1
5d5v_B4e-2931196129Heat shock factor protein 1
5d5v_D4e-2931196129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434623.10.0PREDICTED: heat stress transcription factor A-1a-like
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLD7M9G00.0D7M9G0_ARALL; Heat shock factor
TrEMBLV4LYA90.0V4LYA9_EUTSA; Uncharacterized protein
STRINGXP_010434623.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]