PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 684aa    MW: 76233.8 Da    PI: 5.8767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-1889143256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++ +++t +q++e+e++Fe++++ps+++r +L++ lgLt  qVk+WFqN+R++ +
  Csa10g027650.1  89 SRYHRHTVQQIQEMEAVFEETSHPSESKRLRLSEGLGLTPLQVKFWFQNKRTQIR 143
                     667899*********************************************9876 PP
2START119.93.5e-382434742206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     la ++ qelv++ + +ep+W+k     n+ ++l ++e +k            ++ ea+ra++vv m++++lv+ +ld + qW+e +     +a++
  Csa10g027650.1 243 LAVSCCQELVTMCDINEPLWTKKQ-LCNESVCLNEEEYKKMflwppmddddrFRREASRAKAVVMMNSMTLVKAFLDAG-QWSELFCpivsSAKL 335
                     788999***************999.4555666666655555777777888889**************************.****9999999**** PP

                     EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECTCEEE CS
           START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksnghsk 163
                     ++ iss      g l lm+a +q+ spl p R+ +++Ry ++  ++g+w+ivd  ++s +   +      +  +   ++ pSg++i++++ng+s+
  Csa10g027650.1 336 IQIISSKvsgtnGSLLLMYAGFQVVSPLLPtREGYVLRYVERkAKKGKWIIVDFPIESFRGFVKqastaaTTTIGLYRRKPSGCIIQEMANGYSE 430
                     ******9999********************************99*********99987544333222235444444559**************** PP

                     EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     vtwvehv++++++   ++++  vksg+a+ga +w+a l+rqce+
  Csa10g027650.1 431 VTWVEHVEVEEKQEqGEIVKEYVKSGVAFGAERWLAVLKRQCER 474
                     ************9988**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1675145IPR009057Homeodomain-like
PROSITE profilePS5007115.59785145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1786148IPR009057Homeodomain-like
SMARTSM003899.5E-1586149IPR001356Homeobox domain
CDDcd000868.72E-1487146No hitNo description
PfamPF000463.0E-1589143IPR001356Homeobox domain
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PROSITE profilePS5084838.57233477IPR002913START domain
SuperFamilySSF559617.28E-24234475No hitNo description
CDDcd088752.07E-92237473No hitNo description
SMARTSM002342.6E-25242474IPR002913START domain
PfamPF018524.6E-31243474IPR002913START domain
SuperFamilySSF559612.47E-8495662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MKPSEDVSYS DKIFGSTSSS SPTATIQNPN LKFTAFDNLN FPDMTPKEEE YGVMSMIGSG  60
SGVSTGSGHH YLVENCTAIE QESFPVKRSR YHRHTVQQIQ EMEAVFEETS HPSESKRLRL  120
SEGLGLTPLQ VKFWFQNKRT QIRAQEDSRA NVMLKAENDT LKIESQELQS SSQCLSCSSC  180
GNNLRLENTR LRQELDRLRR IVSMRVDPPP PSQEIACFFP ETDSNNNNDV LIAEEEKAIA  240
MELAVSCCQE LVTMCDINEP LWTKKQLCNE SVCLNEEEYK KMFLWPPMDD DDRFRREASR  300
AKAVVMMNSM TLVKAFLDAG QWSELFCPIV SSAKLIQIIS SKVSGTNGSL LLMYAGFQVV  360
SPLLPTREGY VLRYVERKAK KGKWIIVDFP IESFRGFVKQ ASTAATTTIG LYRRKPSGCI  420
IQEMANGYSE VTWVEHVEVE EKQEQGEIVK EYVKSGVAFG AERWLAVLKR QCERTASLMA  480
TNITDLGVIP SVAARKNLMK LSQRMVKTFC LNISNSYGQA STKDTVRIVT RTVSDGFVPC  540
AVSVTYLPYS HHKVFDLLRD NQRLSQLEIL FNGSSFQEVA HIANGSHPGN NTSLLRINME  600
SNTWHNVELM LQETCTDNSG SLLVFSTVDA DAVQLAMNGK DPSNIPLLPV GFSVVPVNPS  660
DGVEGTSVNL PSCFLTVAIQ VLG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439959.10.0PREDICTED: homeobox-leucine zipper protein HDG4-like isoform X3
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A178UX050.0A0A178UX05_ARATH; HDG4
STRINGXP_010439957.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]