PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 304aa    MW: 35955.9 Da    PI: 6.1952
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.21.1e-135952100
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk ye+++d+++++lisws +g+sf+v+++ e a+++L+k  + +nf  F    + YgFk++  +++k    e   eF+ + F +gk +ll+k
  Csa10g027990.1   5 FLKKAYELVDDPSTDSLISWSPDGSSFLVFNPLECARDLLTKRLQITNFGRF----QSYGFKETVISSGK----ELELEFACSDFVRGKPDLLDK 91 
                     9*****************************************9999999887....69******999988....7889***************** PP

                     XXXX CS
    HSF_DNA-bind  97 ikrk 100
                     i  +
  Csa10g027990.1  92 IADR 95 
                     9866 PP
2HSF_DNA-bind41.63.4e-131612487100
                     HHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind   7 yeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                     y++++d++++++isw  ng+sfvv+++ e ++++Lp+y ++++f  F    ++Yg+++++ ++     +e++ +F+   F +g+ +ll+ki  +
  Csa10g027990.1 161 YDLVDDPSTDSVISWAPNGRSFVVWKPLECSTDLLPRYLQTTHFFKF----HTYGYRRMNITSVP--GQEEQLQFACTDFMRGQPNLLDKIADR 248
                     99****************************************99877....9*******998865..56899******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-14195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-15392IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-16493IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-13593IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-16161246IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-9161248IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-12161246IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-13161245IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALDFLKKAY ELVDDPSTDS LISWSPDGSS FLVFNPLECA RDLLTKRLQI TNFGRFQSYG  60
FKETVISSGK ELELEFACSD FVRGKPDLLD KIADRYMVKL KEFSDRRYGF LSIWGTTREE  120
YDLAMKEEHK ERKEEYKERE RKPTIPPFIY MSWGKDEIFA YDLVDDPSTD SVISWAPNGR  180
SFVVWKPLEC STDLLPRYLQ TTHFFKFHTY GYRRMNITSV PGQEEQLQFA CTDFMRGQPN  240
LLDKIADRYI EKLKATDFWA INERMKNATS KEEYDLARKE LFDRRNKDIK ERMARMKIRH  300
ENE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868068.11e-120heat stress transcription factor A-4a
TrEMBLD7MBZ41e-119D7MBZ4_ARALL; Uncharacterized protein
STRINGBostr.30275s0196.1.p1e-129(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.12e-30HSF family protein