PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g028440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 434aa MW: 47860.9 Da PI: 7.6529

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g028440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.5e-21	34	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++ +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ Csa10g028440.1 34 CWTDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVssssTVGGAPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLFPILD 123 8***********************************99988899*************************9999*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-21	33	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSIPDDGSPV GMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR 60 AADWDDVAAA VSSSSTVGGA PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP 120 ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRARSKR SGKFSGGYSD SPREGYGVRS 180 RARSNMKLYS GGFKSEFDSD HDSGSGFGLK RKYNGNQKVS ADFDADSDDE IVLVPKTTRL 240 RTHGKPSSGD FSHSGGGGFP LKSFGDRNFA SHGFKPKNFT KTEPNFSQDL DYDDEYDDDR 300 AEREGFNPRI QSSRSSSRGN GYSRKDGSYP RNAGVSNGYG SSSRFKHEQM NAAAEVESDP 360 IDEVVSSVKM LTEMFVRVEN SKMDMMKEME KSRMEMELKH CQMMLESQQQ IIGAFAEALS 420 EKKSTTNARR PVS*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSIPDDGSPV GMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR  60
AADWDDVAAA VSSSSTVGGA PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP  120
ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRARSKR SGKFSGGYSD SPREGYGVRS  180
RARSNMKLYS GGFKSEFDSD HDSGSGFGLK RKYNGNQKVS ADFDADSDDE IVLVPKTTRL  240
RTHGKPSSGD FSHSGGGGFP LKSFGDRNFA SHGFKPKNFT KTEPNFSQDL DYDDEYDDDR  300
AEREGFNPRI QSSRSSSRGN GYSRKDGSYP RNAGVSNGYG SSSRFKHEQM NAAAEVESDP  360
IDEVVSSVKM LTEMFVRVEN SKMDMMKEME KSRMEMELKH CQMMLESQQQ IIGAFAEALS  420
EKKSTTNARR PVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g028440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118245	0.0	AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010434726.1	0.0	PREDICTED: uncharacterized protein LOC104718643
Swissprot	O23550	0.0	FRIP2_ARATH; Protein FIP2
TrEMBL	R0F5C6	0.0	R0F5C6_9BRAS; Uncharacterized protein
STRING	XP_010434726.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-22	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]