PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g028980.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 209aa MW: 23126.4 Da PI: 9.8479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g028980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H Csa10g028980.1 5 HKCKLCSKSFCNGRALGGHMKSH 27 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.42E-5	3	28	No hit	No description
PROSITE profile	PS50157	9.598	5	27	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-6	5	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQPSTRKKLA DSVLSSSCSS SDGKSLVYGL 60 RENPRKSFRV FNPDPESSTV YNSETETEPE SGSPVKKRVR AEVSKKKKKK KKSSKRVCEN 120 SKKQKTSHES PEPASSVSDG SPEQDLAMCL MMLSRDSREL EIKPVFASEV VEETKPEKIH 180 FPELRRCMID LNLPPPQETE AVTVVSAI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	111	KKRVRAEVSKKKKKKKK
2	105	111	KKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g028980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010434797.1	1e-149	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A178UZV9	1e-111	A0A178UZV9_ARATH; Uncharacterized protein
STRING	XP_010434797.1	1e-148	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9510	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16610.1	2e-90	C2H2-like zinc finger protein