PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g031620.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CPP

Protein Properties

Length: 699aa MW: 76160.7 Da PI: 6.251

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g031620.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.9	3.2e-16	385	423	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa10g031620.1 385 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 423 689**********************************96 PP
2	TCR	51	2.8e-16	470	509	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkNk Csa10g031620.1 470 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNKF 509 589***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.2E-19	384	425	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.465	385	510	IPR005172	CRC domain
Pfam	PF03638	6.7E-12	387	422	IPR005172	CRC domain
SMART	SM01114	3.2E-17	470	511	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-11	472	508	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MDTPQKSIAQ IGTPISKSRF EDSPVFNYIN TLSPIRPVKS IQNPHQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SSSSHPTNPV ESRENESTSN ESVSAEAAED TKDVNVDDAS 120 KPEEASVEMV LPQTNPGSPV ASPCGRDSTT DLSLVPYAPT QGGNGSCEGS GMELQQKMFD 180 NVQGKTETPD WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFNT GVGMQTMQPD 240 TNKKPESSDA IPYEAVSFLH RGIRRRCLDF EMPGNKQTLS ENNTAACESS SRCIVPSIGL 300 HLNAIAMSSK DCKTNVTQDY SCSGNIQVGL QSSISSTLQE TLDQTENETR EDADQDVPVE 360 PALQELNLSS PKKKRVKLDS GEGDSCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF 420 NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NSDSVLETGD DASKTPASAR HKRGCNCKKS 480 NCLKKYCECY QGGVGCSINC RCEGCKNKFG RKDGSSIVDM EAEXCKTNVT QDYSCSGNIQ 540 VGLQSSISST LQXTEFLMRK EASSALPTTP TPIYRQELVQ LPFSSSKNRM LPPQSLLGGG 600 CSSGIFNSQY IRKPDIDLTQ SRMEKSFETV AEDRAEEMPE ILIHSPIPNI KSVSPNGKRV 660 SPPHMESSSS GSVSGRRSGG RKLILQSIPS FPSLTPQH*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MDTPQKSIAQ IGTPISKSRF EDSPVFNYIN TLSPIRPVKS IQNPHQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SSSSHPTNPV ESRENESTSN ESVSAEAAED TKDVNVDDAS  120
KPEEASVEMV LPQTNPGSPV ASPCGRDSTT DLSLVPYAPT QGGNGSCEGS GMELQQKMFD  180
NVQGKTETPD WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFNT GVGMQTMQPD  240
TNKKPESSDA IPYEAVSFLH RGIRRRCLDF EMPGNKQTLS ENNTAACESS SRCIVPSIGL  300
HLNAIAMSSK DCKTNVTQDY SCSGNIQVGL QSSISSTLQE TLDQTENETR EDADQDVPVE  360
PALQELNLSS PKKKRVKLDS GEGDSCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF  420
NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NSDSVLETGD DASKTPASAR HKRGCNCKKS  480
NCLKKYCECY QGGVGCSINC RCEGCKNKFG RKDGSSIVDM EAEXCKTNVT QDYSCSGNIQ  540
VGLQSSISST LQXTEFLMRK EASSALPTTP TPIYRQELVQ LPFSSSKNRM LPPQSLLGGG  600
CSSGIFNSQY IRKPDIDLTQ SRMEKSFETV AEDRAEEMPE ILIHSPIPNI KSVSPNGKRV  660
SPPHMESSSS GSVSGRRSGG RKLILQSIPS FPSLTPQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-17	389	507	14	120	Protein lin-54 homolog
5fd3_B	5e-17	389	507	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	370	377	PKKKRVKL
2	370	378	PKKKRVKLD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g031620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-133	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-133	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-133	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435070.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_010435070.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]