PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g033180.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 463aa MW: 50276.3 Da PI: 5.7668

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g033180.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Csa10g033180.1 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-32	34	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.541	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	4.93E-17	36	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-24	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-24	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.5E-24	302	348	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MYSAIHSSLP LDGSLGDYSD GTNLPIDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP 60 DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQSCKESI DNSKDVSCVG ESQDTGSSST 120 SSLRIAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEVQRRL QQRIETQGKY LQSILEKACK 180 AIEEQAVAFA GLEAAREELS ELAIKVSISN GCQGGTTTNT FETTKITIPS LSELAVAIEN 240 KNNCSAESSL TSSTKFRLGR QSCKESIDNS KDVSCVGESQ DTGSSSTSSL RIAAQEQNES 300 YQVTEALRAQ MEVQRRLHEQ LEVQRRLQQR IETQGKYLQS ILEKACKAIE EQAVAFAGLE 360 AAREELSELA IKVSISNGCQ GGTTTNTFET TKITIPSLSE LAVAIENKNN CSAESSLTSS 420 TVGSPVSAAL MKKRQRGVFG NGDSLVVGHD EAGWVIPSSS IG*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MYSAIHSSLP LDGSLGDYSD GTNLPIDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP  60
DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQSCKESI DNSKDVSCVG ESQDTGSSST  120
SSLRIAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEVQRRL QQRIETQGKY LQSILEKACK  180
AIEEQAVAFA GLEAAREELS ELAIKVSISN GCQGGTTTNT FETTKITIPS LSELAVAIEN  240
KNNCSAESSL TSSTKFRLGR QSCKESIDNS KDVSCVGESQ DTGSSSTSSL RIAAQEQNES  300
YQVTEALRAQ MEVQRRLHEQ LEVQRRLQQR IETQGKYLQS ILEKACKAIE EQAVAFAGLE  360
AAREELSELA IKVSISNGCQ GGTTTNTFET TKITIPSLSE LAVAIENKNN CSAESSLTSS  420
TVGSPVSAAL MKKRQRGVFG NGDSLVVGHD EAGWVIPSSS IG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g033180.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226443	0.0	AK226443.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-12-H15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435238.1	1e-177	PREDICTED: protein PHR1-LIKE 3
Swissprot	Q8LAJ7	1e-174	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	R0GXT3	1e-173	R0GXT3_9BRAS; Uncharacterized protein
STRING	XP_010435238.1	1e-177	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-135	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]