PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g033280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 324aa MW: 35682 Da PI: 5.0843

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g033280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.2	2.3e-37	136	228	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqrlwse+De +lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+ k+kk + ++++hd+k++el+k i Csa10g033280.1 136 KLFQRLWSEDDETSLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAKQKK-----KSGLESSHDKKCLELAKYI 225 579*****************************************************************9.....667889*********** PP DUF573 96 Wgs 98 Wgs Csa10g033280.1 226 WGS 228 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.3E-28	138	227	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAKKVLNPLE DPPTASSSSG DEEVETLSGE EDVEQTSNSS SSSSSSEEED DPKDLATPKT 60 LKTPPANASS TESEDSESES EPSPEKTIAV VVTTKPKKNE STAAKPGKKR GSEAETTSKD 120 MHVKKAKKVS GDDEKKLFQR LWSEDDETSL LQGMIDFKAE KGTSPYDDMN GFFDMAKNNI 180 SFDVSKIQFG DKIRSLKKKY FAKQKKKSGL ESSHDKKCLE LAKYIWGSDG KLKKFGGDNV 240 GEEVILGGDS ESLSLFEKSF LVRTIAGLGV DEFSVKEKWS KVSLETKKRI EEKLKLVEAK 300 EYELLRLKSD TLKEVAYVMT RGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g033280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435246.1	0.0	PREDICTED: probable transcription factor At1g44810
Swissprot	Q9LPF0	1e-103	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	A0A178W944	3e-98	A0A178W944_ARATH; Uncharacterized protein
STRING	XP_010435246.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	1e-84	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]