PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 218aa    MW: 24665.6 Da    PI: 8.8954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.6e-123714644128
             NAM  44 PwdLpk...................kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk......dkevlskkgelvglkktLvfy.kgr 112
                     P+dLpk                   k+k++++ w+fF+++ +ky++g r++r+t +g+W  + k      +ke +++++ l g+ k + fy ++ 
  Csa10g046660.1  37 PEDLPKreiitisyfsynynlsghsKLKSTTNVWFFFTPA-RKYNRGPRTKRVTPHGRWGVKLKegggskKKEFKDQNSDLSGTMKPFNFYtRNI 130
                     5555533555555555555555554556666677777775.7799**************7443211122266777779999**********4445 PP

             NAM 113 apkgektdWvmheyrl 128
                     ++k + t+W m+eyrl
  Csa10g046660.1 131 DKKEKLTSWSMEEYRL 146
                     666678********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.2247160IPR003441NAC domain
SuperFamilySSF1019412.35E-1621160IPR003441NAC domain
PfamPF023652.7E-928146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASVSSPAPE SSTAATTPEI YQLAISLPPG FFFQPSPEDL PKREIITISY FSYNYNLSGH  60
SKLKSTTNVW FFFTPARKYN RGPRTKRVTP HGRWGVKLKE GGGSKKKEFK DQNSDLSGTM  120
KPFNFYTRNI DKKEKLTSWS MEEYRLDNFD TFSLCKLFQR KKEDEEPNPA IMVEQPTEIA  180
QNNVQQEGRD NTLHDTSSSS SDDDAATALL MIPQART*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445665.11e-120PREDICTED: NAC domain-containing protein 86-like
STRINGXP_010445665.11e-119(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-12NAC domain containing protein 28