PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 139aa    MW: 15544.5 Da    PI: 9.0398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-102053438
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     WT+  d++l+++v+ +G ++W++Ia++m+ +R+++
   Csa10g046850.1 20 WTESQDLKLIELVEAYGLESWNLIAEKMQ-TRSGN 53
                     *****************************.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5261253IPR017877Myb-like domain
SuperFamilySSF466893.59E-81453IPR009057Homeodomain-like
SMARTSM007178.3E-41671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-91953IPR009057Homeodomain-like
CDDcd001671.50E-92064No hitNo description
PfamPF002491.1E-92053IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MHQERKKKKT KRPSRGERLW TESQDLKLIE LVEAYGLESW NLIAEKMQTR SGNGSYEGIE  60
IKNYSCNTPK EEATNLYARM PVQLSGHHHH FPTFPAGSSS AIFTPHVSIS KPSSSPEAAD  120
TMTRETPKFI DFLGVGHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312ERKKKKTKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445657.17e-51PREDICTED: transcriptional activator Myb-like
TrEMBLR0GYZ63e-31R0GYZ6_9BRAS; Uncharacterized protein
STRINGXP_010445657.13e-50(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-08myb domain protein 110