PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 146aa    MW: 16876 Da    PI: 6.7886
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.76.9e-25255255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     r++Wt + H+ Fveave LGG+  AtPk+il+ m+  +Ltl+++kSHLQ+YR 
  Csa10g046870.1  2 SRMHWTDDRHQLFVEAVEFLGGERTATPKKILNYMGEADLTLSQIKSHLQMYRN 55
                    69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.666158IPR017930Myb domain
TIGRFAMsTIGR015572.9E-24257IPR006447Myb domain, plants
SuperFamilySSF466891.02E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-22256IPR009057Homeodomain-like
PfamPF002491.1E-8354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSRMHWTDDR HQLFVEAVEF LGGERTATPK KILNYMGEAD LTLSQIKSHL QMYRNKKEGV  60
FVKERRMIQN MNQRQSQQYL EIYECVRDAV QNQQNTKKVT PTEVSCKSLY QSSRVGRNEN  120
RDNDVIASGD GANGEEDMSL ELTLGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422280.29e-94PREDICTED: transcription repressor KAN1-like
TrEMBLR0HDE76e-59R0HDE7_9BRAS; Uncharacterized protein
STRINGXP_010422281.17e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.17e-47G2-like family protein