PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g047240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 257aa    MW: 29534.1 Da    PI: 5.6899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g047240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141761348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT  Ed  l++ vk+  ++ W++Ia+++  gRt+kqck+rw ++l
   Csa10g047240.1 17 KWTNSEDTELKKIVKEVEPNKWTKIAKKLK-GRTGKQCKERWENHL 61
                     8****************************9.************996 PP
2Myb_DNA-binding47.44.3e-1569111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eEd++l++++k  G++ W  Ia++++ gR+++ +k++w++ 
   Csa10g047240.1  69 AWSKEEDQILIELHKVVGTK-WVNIAQKLP-GRSPNCIKNHWNTT 111
                      6*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-19865IPR009057Homeodomain-like
PROSITE profilePS5129417.011061IPR017930Myb domain
SuperFamilySSF466893.18E-2813108IPR009057Homeodomain-like
SMARTSM007179.3E-141463IPR001005SANT/Myb domain
CDDcd001674.47E-131761No hitNo description
PfamPF139218.1E-171876No hitNo description
PROSITE profilePS5129424.4762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2066114IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
CDDcd001671.27E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRTSKHSKK GNTIKAKWTN SEDTELKKIV KEVEPNKWTK IAKKLKGRTG KQCKERWENH  60
LHPDIKDAAW SKEEDQILIE LHKVVGTKWV NIAQKLPGRS PNCIKNHWNT TMRRVQKQSG  120
ENFNFADNNI LENYIRYVII DNDNLSKTTE TDGEATNTED DDEYNKDMFF EEPDPNMNGG  180
THITDVRTQT IDVGTQTMDA GMQTIDASMQ TNQPLVTAPT TSYYVPTPEM CPWNNYATEL  240
CQPVNDGLKD LLQWWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-36141143103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-351411457157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-351411457157MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-36141143103C-Myb DNA-Binding Domain
1msf_C5e-36141143103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g047240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435898.20.0PREDICTED: transcription factor MYB98-like
TrEMBLR0GJE84e-74R0GJE8_9BRAS; Uncharacterized protein
STRINGXP_010435898.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.12e-76myb domain protein 100