PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g047360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27568.1 Da PI: 10.1359

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g047360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.6	2.5e-21	6	54	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s v +s+R+++++ KAe LSvLC++ev+vi+++++g+l++++ Csa10g047360.1 6 SSSSSSYPLVALSNRLETLFRKAEQLSVLCQIEVCVIYYGPQGELKTWP 54 578888889***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	1.12E-15	15	81	No hit	No description
Pfam	PF00319	2.9E-12	15	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-13	15	89	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.316	15	57	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MRSLPSSSSS SYPLVALSNR LETLFRKAEQ LSVLCQIEVC VIYYGPQGEL KTWPHEREKV 60 RNMAMRYSRL NESLRSKKRV NLSEFLKDKD KGLENPNKRR KTSSPKKNVD VLKYPISDHY 120 SPDQIPQLIQ SLQLNISTFQ RRLRFLESQE KHKLLDHHHQ SLASSSSLTT HSLNPSLHQS 180 LASSSSLTTQ SLNPSQQFSL FVYNHGDNTL SQIPVSASNL NNQDFSALLQ GSQLKNEHNM 240 Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g047360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010436822.1	1e-175	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FIX0	1e-75	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	D7MJC3	4e-87	D7MJC3_ARALL; Uncharacterized protein (Fragment)
STRING	XP_010436822.1	1e-175	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40120.1	5e-66	AGAMOUS-like 76

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]