PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 661aa    MW: 76295.2 Da    PI: 7.9744
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09450492146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  k++G++ W+t a  +g  + +k++k+ w+ 
   Csa10g049550.1 450 KGVWTQEDLELVIEFQKKHGND-WRTLADALG--KDRKHVKDAWRR 492
                      799*******************.********8..899****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-4375445IPR009057Homeodomain-like
SMARTSM007170.023376447IPR001005SANT/Myb domain
PROSITE profilePS500904.298379440IPR017877Myb-like domain
PROSITE profilePS500907.48445494IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.4E-7449492IPR009057Homeodomain-like
SuperFamilySSF466895.31E-8449507IPR009057Homeodomain-like
SMARTSM007171.7E-4449496IPR001005SANT/Myb domain
PfamPF139211.3E-10453511No hitNo description
PROSITE profilePS500906.899495563IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-5498564IPR009057Homeodomain-like
SMARTSM0071710499565IPR001005SANT/Myb domain
SuperFamilySSF466893.39E-5543617IPR009057Homeodomain-like
PROSITE profilePS500907.433565618IPR017877Myb-like domain
SMARTSM0071728569620IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAEEKKKKNK KSDEIRVDSG GTVEEVVSEH SSMKKKEKKK KKKNREFKDD FAGEDGDIAE  60
RESEKLGEDA LVKKMKSRKQ MIDSEAEDGV KKKKSKKESG SDVLGNSESF KVCDKRKRED  120
CDLGAEEYTD KEVKRQSKKK KPSVVSETSL NSTNDAKRNI METNTSVDPE DDNKDSTKHA  180
KKERKKKEKQ QSVDSEVEDN NLINSSNDAR KKIKEKEPSK DSTNDAIKKS KEKEPSKDSE  240
LEEHNKNSKK DAKKIHNVDS EADENDLTST KDAKKKRKKK KQSDVSEAEE VNNNDGKDAK  300
KKRKKKQTEV SEAEENNNDA KKKRKKKKQE CGQSDKDVTT PSSKSTKRVT FSDQVEFFPA  360
ADEESEEDEA EVKLVRGKRF TKEEDELVKN SVLEYVDNHA LGDDGVKMVM ECKSHPQLKG  420
CWKEIASALP WRAYDSVYHR AHTIFEEGSK GVWTQEDLEL VIEFQKKHGN DWRTLADALG  480
KDRKHVKDAW RRIRLASKKK GHWTREEYQN LFDLVNKDIR MKAFQEKHAK HGMLKDNIPW  540
MAISDVLGTR DHVTCCTKWY DQLTSPMVAK GTWANVDDYR LLEELLKLDA ACIDDVDWDY  600
LLENRDAEAC RKRWNQMVLH IGIPKSKTFV EQVEILSERY RPDIAEDRED FDNRPYDPED  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13442KKEKKKKKK
2183188RKKKEK
3303325KKKQTEVSEAEENNNDAKKKRKK
4321325KKRKK
5321327KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436042.10.0PREDICTED: glutamic acid-rich protein
TrEMBLR0GFG20.0R0GFG2_9BRAS; Uncharacterized protein
STRINGXP_010436042.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein