PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g049670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 262aa MW: 30061.9 Da PI: 10.1802

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g049670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	66.1	7.8e-21	66	151	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + w+ + e+++L+ +t++s+++d++a+y+ +++s+++++sk+ql +Ki ++K +f++ +++++ gk sf+++hd+++f ls+ iWg Csa10g049670.1 66 MNWTITEELLILK-------ETKASYMSDWNAVYDRIRGSMESDFSKRQLQNKIEKMKLRFRDYQTRSSAGKRLSFTNAHDKQVFRLSMAIWG 151 5566666666664.......788999******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-17	66	151	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKRGSDSSED SSSDYFVIRH NPQPLTKRKH EDDEEISGTE AMLRKRKQLK TRKTLLEASS 60 SGACKMNWTI TEELLILKET KASYMSDWNA VYDRIRGSME SDFSKRQLQN KIEKMKLRFR 120 DYQTRSSAGK RLSFTNAHDK QVFRLSMAIW GEIENNKTKS ASNENINMDQ RKVWVSNATD 180 DGEKDKSEDL NVLQEALEVA ASFRSLGNHQ QRSLLRNLKN LGATQRKELT HEWKALLAQD 240 MQLGIKKQSF YAKLVNAGFS A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	46	KRKHEDDEEISGTEAMLRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g049670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010436055.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 3
Swissprot	Q9SJM4	2e-25	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	R0F6M4	1e-109	R0F6M4_9BRAS; Uncharacterized protein
STRING	XP_010436055.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	7e-26	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]