PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 226aa    MW: 26448.6 Da    PI: 9.8522
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573705e-221021841797
          DUF573  17 qGlidfkaktgkspsddidafyefvkks..isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +G+++f+++t++s+ +++d+fy+++++s  i +++sk+ql+ K+++LKk+f++++++a++g   sf++++d++ f lsk+iW 
  Csa10g049680.1 102 RGILEFQKETESSYNKNWDDFYSYMRESmtIRSDFSKQQLMGKVKKLKKRFRDNQARANDGIRLSFTNTDDEELFRLSKIIWV 184
                     8*************************98335689************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-16102183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKRLFQGSAS SDDYSNSRPR FGIRHNNNNN NSRPMLPSPY SRKREHDEDI SGREAMLRRR  60
KLPSTTATFV LPSSSSLKIA WSKNAEISTL SCLPFSVVVW KRGILEFQKE TESSYNKNWD  120
DFYSYMRESM TIRSDFSKQQ LMGKVKKLKK RFRDNQARAN DGIRLSFTNT DDEELFRLSK  180
IIWVEKETEW VYEENKNQTK EDVPCAEHEQ RVVRNANTEV KNGEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14160RKREHDEDISGREAMLRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087528.11e-95PREDICTED: GLABROUS1 enhancer-binding protein-like 3
TrEMBLD7MIY52e-59D7MIY5_ARALL; Predicted protein (Fragment)
STRINGXP_010436854.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.16e-34DNA-binding storekeeper protein-related transcriptional regulator