PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11092s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 103aa    MW: 11987.5 Da    PI: 4.9478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11092s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.14.2e-392103214315
            GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                     +desvs+e++rd++L+l+kslsP++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a  pr++++ri+ E+++++r+ivn++ace++er+er
  Csa11092s010.1   2 PDESVSVENHRDRLLHLIKSLSPRLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVER 96 
                     799******************************************************************************************** PP

            GRAS 309 hetlekW 315
                     he l+kW
  Csa11092s010.1  97 HEVLGKW 103
                     ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.7041103IPR005202Transcription factor GRAS
PfamPF035141.4E-362103IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MPDESVSVEN HRDRLLHLIK SLSPRLVTLV EQESNTNTSP FLSRFVETLD YYTAMFESID  60
AARPRDDKQR ISAEQHCVAR DIVNMIACEE SERVERHEVL GKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-1314103224314GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11092s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4195701e-127AF419570.1 Arabidopsis thaliana AT4g17230/dl4650c mRNA, complete cds.
GenBankAK2265491e-127AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03.
GenBankAK3172101e-127AK317210.1 Arabidopsis thaliana AT4G17230 mRNA, partial cds, clone: RAFL22-01-M20.
GenBankBT0010761e-127BT001076.1 Arabidopsis thaliana At4g17230/dl4650c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440036.11e-67PREDICTED: scarecrow-like protein 13
RefseqXP_010440037.11e-67PREDICTED: scarecrow-like protein 13
RefseqXP_010449649.11e-67PREDICTED: scarecrow-like protein 13
RefseqXP_010449650.11e-67PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M53e-68SCL13_ARATH; Scarecrow-like protein 13
TrEMBLB9DGM64e-68B9DGM6_ARATH; AT4G17230 protein (Fragment)
STRINGfgenesh2_kg.7__2586__AT4G17230.11e-67(Arabidopsis lyrata)
STRINGXP_010440036.14e-67(Camelina sativa)
STRINGXP_010449649.15e-67(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.12e-69SCARECROW-like 13