PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11147s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 111aa    MW: 12480.2 Da    PI: 4.629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11147s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.11.5e-1186109225
         G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                     prlrWtpeLH +F++ave+LGG++
  Csa11147s010.1  86 PRLRWTPELHICFLQAVERLGGPD 109
                     9*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-982109IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-886110IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MRSSSKSSEN SKTCLSNNFK ATTNIEEDKD EEEDEEGEED EEERSGDQSP SSNSYVEESG  60
SHQNHHHDQI KKNGGSVRPY NRSKTPRLRW TPELHICFLQ AVERLGGPDS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11147s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545951e-168AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505750.12e-72PREDICTED: putative two-component response regulator-like APRR6
TrEMBLR0FW673e-69R0FW67_9BRAS; Uncharacterized protein
STRINGXP_010505750.17e-72(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-42G2-like family protein